HL_4V68_100

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

4V68|1|BA|U|2406

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V68_100 not in the Motif Atlas

Homologous match to HL_4WF9_055

Geometric discrepancy: 0.1422

The information below is about HL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V68|1|BA|C|2404
4V68|1|BA|G|2405
4V68|1|BA|U|2406
4V68|1|BA|G|2407
4V68|1|BA|U|2408
4V68|1|BA|G|2409
4V68|1|BA|G|2410
4V68|1|BA|A|2411
4V68|1|BA|A|2412
4V68|1|BA|G|2413

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BP

50S ribosomal protein L15