HL_4V69_035
3D structure
- PDB id
- 4V69 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex-bound E.coli 70S ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- G(5MU)UCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- 4V69|1|AV|U|55
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V69_035 not in the Motif Atlas
- Homologous match to HL_1H4S_003
- Geometric discrepancy: 0.2027
- The information below is about HL_1H4S_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
4V69|1|AV|G|53
4V69|1|AV|5MU|54
4V69|1|AV|U|55
4V69|1|AV|C|56
4V69|1|AV|A|57
4V69|1|AV|A|58
4V69|1|AV|A|59
4V69|1|AV|U|60
4V69|1|AV|C|61
Current chains
- Chain AV
- E-site tRNA Phe
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BF
- 50S ribosomal protein L5
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