4V69 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V69_001 | No text annotation | ||
| HL_4V69_002 | No text annotation | ||
| HL_4V69_003 | GNRA | ||
| HL_4V69_004 | GNRA | ||
| HL_4V69_005 | UNCG | ||
| HL_4V69_006 | GNRA related | ||
| HL_4V69_007 | GNRA | ||
| HL_4V69_008 | No text annotation | ||
| HL_4V69_009 | UNCG | ||
| HL_4V69_010 | GNRA | ||
| HL_4V69_011 | UNCG | ||
| HL_4V69_012 | No text annotation | ||
| HL_4V69_013 | No text annotation | ||
| HL_4V69_014 | GNRA-like with tWH | ||
| HL_4V69_015 | No text annotation | ||
| HL_4V69_016 | GNRA | ||
| HL_4V69_017 | No text annotation | ||
| HL_4V69_018 | No text annotation | ||
| HL_4V69_019 | GNRA | ||
| HL_4V69_020 | GNRA | ||
| HL_4V69_021 | No text annotation | ||
| HL_4V69_022 | GNRA | ||
| HL_4V69_023 | UNCG | ||
| HL_4V69_024 | GNRA | ||
| HL_4V69_025 | T-loop related | ||
| HL_4V69_026 | No text annotation | ||
| HL_4V69_027 | GNRA | ||
| HL_4V69_028 | GNRA | ||
| HL_4V69_029 | T-loop with 3 stacked bulged bases | ||
| HL_4V69_030 | No text annotation | ||
| HL_4V69_031 | UNCG | ||
| HL_4V69_032 | GNRA | ||
| HL_4V69_033 | tRNA D-loop | ||
| HL_4V69_034 | tRNA anticodon loop | ||
| HL_4V69_035 | T-loop with 2 stacked bulged bases | ||
| HL_4V69_036 | tRNA D-loop | ||
| HL_4V69_037 | No text annotation | ||
| HL_4V69_038 | T-loop with 2 stacked bulged bases | ||
| HL_4V69_039 | tRNA D-loop | ||
| HL_4V69_040 | No text annotation | ||
| HL_4V69_041 | T-loop with 2 stacked bulged bases | ||
| HL_4V69_113 | No text annotation | ||
| HL_4V69_042 | No text annotation | ||
| HL_4V69_043 | Mini UNCG | ||
| HL_4V69_044 | No text annotation | ||
| HL_4V69_045 | No text annotation | ||
| HL_4V69_046 | No text annotation | ||
| HL_4V69_047 | No text annotation | ||
| HL_4V69_048 | No text annotation | ||
| HL_4V69_049 | No text annotation | ||
| HL_4V69_050 | No text annotation | ||
| HL_4V69_051 | No text annotation | ||
| HL_4V69_052 | T-loop with 2 stacked bulged bases | ||
| HL_4V69_053 | No text annotation | ||
| HL_4V69_054 | T-loop with unstacked turn | ||
| HL_4V69_055 | No text annotation | ||
| HL_4V69_056 | No text annotation | ||
| HL_4V69_057 | GNRA | ||
| HL_4V69_058 | GNRA | ||
| HL_4V69_059 | No text annotation | ||
| HL_4V69_060 | T-loop with 2 stacked bulged bases | ||
| HL_4V69_061 | No text annotation | ||
| HL_4V69_062 | GNRA | ||
| HL_4V69_063 | GNRA | ||
| HL_4V69_064 | GNRA wlth tandem sheared | ||
| HL_4V69_065 | No text annotation | ||
| HL_4V69_066 | UNCG | ||
| HL_4V69_067 | No text annotation | ||
| HL_4V69_068 | No text annotation | ||
| HL_4V69_069 | GNRA | ||
| HL_4V69_070 | No text annotation | ||
| HL_4V69_071 | No text annotation | ||
| HL_4V69_072 | No text annotation | ||
| HL_4V69_114 | GNRA wlth tandem sheared | ||
| HL_4V69_073 | No text annotation | ||
| HL_4V69_074 | GNRA | ||
| HL_4V69_075 | T-loop with 2 stacked bulged bases | ||
| HL_4V69_076 | Pseudoknot geometry with 3' bulge | ||
| HL_4V69_077 | GNRA | ||
| HL_4V69_078 | No text annotation | ||
| HL_4V69_079 | No text annotation | ||
| HL_4V69_080 | Pseudoknot geometry with 3' bulge | ||
| HL_4V69_081 | UNCG | ||
| HL_4V69_082 | Mini UNCG | ||
| HL_4V69_083 | No text annotation | ||
| HL_4V69_084 | GNRA | ||
| HL_4V69_085 | UNCG | ||
| HL_4V69_086 | No text annotation | ||
| HL_4V69_087 | No text annotation | ||
| HL_4V69_088 | No text annotation | ||
| HL_4V69_089 | GNRA related | ||
| HL_4V69_090 | GNRA variation | ||
| HL_4V69_091 | No text annotation | ||
| HL_4V69_092 | No text annotation | ||
| HL_4V69_093 | No text annotation | ||
| HL_4V69_094 | No text annotation | ||
| HL_4V69_095 | No text annotation | ||
| HL_4V69_096 | No text annotation | ||
| HL_4V69_115 | No text annotation | ||
| HL_4V69_097 | No text annotation | ||
| HL_4V69_098 | No text annotation | ||
| HL_4V69_099 | Pseudoknot geometry | ||
| HL_4V69_100 | GNRA | ||
| HL_4V69_101 | GNRA | ||
| HL_4V69_102 | No text annotation | ||
| HL_4V69_103 | No text annotation | ||
| HL_4V69_104 | GNRA variation | ||
| HL_4V69_105 | No text annotation | ||
| HL_4V69_106 | GNRA | ||
| HL_4V69_107 | GNRA | ||
| HL_4V69_108 | Ribsomal LSU H95 | ||
| HL_4V69_109 | No text annotation | ||
| HL_4V69_110 | Mini UNCG | ||
| HL_4V69_111 | No text annotation | ||
| HL_4V69_112 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V69_001 | Single bulged G | ||
| IL_4V69_002 | Single bulged A | ||
| IL_4V69_003 | No text annotation | ||
| IL_4V69_004 | Minor groove platform | ||
| IL_4V69_005 | Multiple bulged bases | ||
| IL_4V69_006 | Minor groove platform with extra cWW | ||
| IL_4V69_007 | Minor groove platform | ||
| IL_4V69_008 | No text annotation | ||
| IL_4V69_009 | Isolated non-canonical cWW pair | ||
| IL_4V69_010 | No text annotation | ||
| IL_4V69_011 | Isolated cWH basepair | ||
| IL_4V69_012 | tWH-tWH-tHW-tHW | ||
| IL_4V69_013 | Minor groove platform | ||
| IL_4V69_014 | Kink-turn with non-sequential stacking | ||
| IL_4V69_015 | No text annotation | ||
| IL_4V69_016 | C-loop | ||
| IL_4V69_017 | Single bulged U | ||
| IL_4V69_018 | C-loop | ||
| IL_4V69_019 | Single bulged G | ||
| IL_4V69_020 | No text annotation | ||
| IL_4V69_021 | No text annotation | ||
| IL_4V69_022 | tSH-tHW-tWW | ||
| IL_4V69_023 | No text annotation | ||
| IL_4V69_024 | Single stack bend | ||
| IL_4V69_025 | Single bulged A | ||
| IL_4V69_026 | SSU/LSU pseudoknot | ||
| IL_4V69_027 | Kink-turn related | ||
| IL_4V69_028 | No text annotation | ||
| IL_4V69_029 | tSH-tHW-tHS | ||
| IL_4V69_030 | Major groove platform | ||
| IL_4V69_031 | Major groove minor groove platform; mini C-loop | ||
| IL_4V69_032 | No text annotation | ||
| IL_4V69_033 | Major groove platform; stack outside cWW | ||
| IL_4V69_034 | Single stack bend | ||
| IL_4V69_035 | Tandem non-canonical cWW pairs | ||
| IL_4V69_181 | Triple non-canonical cWW pairs | ||
| IL_4V69_036 | No text annotation | ||
| IL_4V69_037 | Kink-turn | ||
| IL_4V69_038 | Left turn | ||
| IL_4V69_039 | tSH-tHW-tHS | ||
| IL_4V69_040 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V69_041 | Single bulged A | ||
| IL_4V69_042 | Single bulged G | ||
| IL_4V69_043 | Minor groove platform | ||
| IL_4V69_044 | Minor groove platform | ||
| IL_4V69_045 | Minor groove platform | ||
| IL_4V69_046 | Single stack bend | ||
| IL_4V69_047 | Single bulged U | ||
| IL_4V69_048 | Isolated cWS basepair | ||
| IL_4V69_049 | Minor groove platform | ||
| IL_4V69_050 | Single bulged A | ||
| IL_4V69_051 | Isolated non-canonical cWW pair | ||
| IL_4V69_052 | No text annotation | ||
| IL_4V69_053 | Minor groove platform | ||
| IL_4V69_054 | No text annotation | ||
| IL_4V69_055 | No text annotation | ||
| IL_4V69_056 | 180 degree turn | ||
| IL_4V69_057 | Double sheared with non-canonical cWW | ||
| IL_4V69_058 | No text annotation | ||
| IL_4V69_059 | No text annotation | ||
| IL_4V69_191 | No text annotation | ||
| IL_4V69_060 | No text annotation | ||
| IL_4V69_061 | Isolated non-canonical cWW pair | ||
| IL_4V69_062 | Decoding loop related | ||
| IL_4V69_182 | Isolated non-canonical cWW pair | ||
| IL_4V69_063 | Tandem non-canonical cWW pairs | ||
| IL_4V69_064 | Double sheared | ||
| IL_4V69_065 | Triple sheared related | ||
| IL_4V69_066 | Single bulged A | ||
| IL_4V69_067 | No text annotation | ||
| IL_4V69_068 | Major groove intercalation | ||
| IL_4V69_069 | No text annotation | ||
| IL_4V69_070 | No text annotation | ||
| IL_4V69_071 | Symmetric double minor groove platform | ||
| IL_4V69_072 | Bacterial 5S Loop E | ||
| IL_4V69_073 | Triple sheared with non-canonical cWW | ||
| IL_4V69_074 | Single bulged A | ||
| IL_4V69_075 | Minor groove platform | ||
| IL_4V69_076 | No text annotation | ||
| IL_4V69_183 | Kink-turn | ||
| IL_4V69_077 | Single stack bend | ||
| IL_4V69_078 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V69_079 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V69_080 | No text annotation | ||
| IL_4V69_081 | No text annotation | ||
| IL_4V69_082 | No text annotation | ||
| IL_4V69_083 | No text annotation | ||
| IL_4V69_084 | Double sheared | ||
| IL_4V69_085 | Isolated non-canonical cWW pair | ||
| IL_4V69_086 | AAA cross-strand stack | ||
| IL_4V69_087 | Isolated non-canonical cWW pair | ||
| IL_4V69_088 | tHW-tHW cross-strand stack | ||
| IL_4V69_089 | Single bulged A | ||
| IL_4V69_090 | Single bulged G | ||
| IL_4V69_091 | Triple sheared | ||
| IL_4V69_092 | Major groove platform | ||
| IL_4V69_093 | Multiple bulged bases | ||
| IL_4V69_094 | Single stack bend | ||
| IL_4V69_095 | No text annotation | ||
| IL_4V69_096 | Single stack bend | ||
| IL_4V69_097 | Isolated non-canonical cWW pair | ||
| IL_4V69_184 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V69_098 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V69_099 | Single bulged G | ||
| IL_4V69_100 | C-loop with bulged stacked A's | ||
| IL_4V69_101 | Isolated non-canonical cWW pair | ||
| IL_4V69_102 | No text annotation | ||
| IL_4V69_192 | No text annotation | ||
| IL_4V69_103 | Isolated non-canonical cWW pair | ||
| IL_4V69_104 | Single bulged C | ||
| IL_4V69_105 | UAA/GAN | ||
| IL_4V69_106 | SSU/LSU pseudoknot | ||
| IL_4V69_107 | Single bulged U | ||
| IL_4V69_108 | No text annotation | ||
| IL_4V69_185 | Kink-turn related | ||
| IL_4V69_109 | No text annotation | ||
| IL_4V69_110 | Isolated non-canonical cWW pair | ||
| IL_4V69_111 | Tandem non-canonical cWW pairs | ||
| IL_4V69_112 | Kink-turn | ||
| IL_4V69_113 | No text annotation | ||
| IL_4V69_114 | No text annotation | ||
| IL_4V69_115 | Isolated cWS basepair | ||
| IL_4V69_116 | No text annotation | ||
| IL_4V69_117 | Kink-turn | ||
| IL_4V69_118 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V69_119 | Major groove platform; stack outside cWW | ||
| IL_4V69_120 | C-loop | ||
| IL_4V69_121 | UAA/GAN | ||
| IL_4V69_122 | tSH-tHW-tHS | ||
| IL_4V69_123 | No text annotation | ||
| IL_4V69_124 | UAA/GAN | ||
| IL_4V69_125 | Tandem non-canonical cWW pairs | ||
| IL_4V69_126 | No text annotation | ||
| IL_4V69_127 | No text annotation | ||
| IL_4V69_128 | tSH-tHW-tHS | ||
| IL_4V69_129 | No text annotation | ||
| IL_4V69_130 | Single bulged A | ||
| IL_4V69_131 | UAA/GAN variation | ||
| IL_4V69_132 | No text annotation | ||
| IL_4V69_133 | Isolated tWW turn | ||
| IL_4V69_134 | Major groove platform; stack outside cWW | ||
| IL_4V69_186 | No text annotation | ||
| IL_4V69_135 | Intercalated tWH | ||
| IL_4V69_136 | tSH-tSH-tHH-tHS | ||
| IL_4V69_137 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V69_138 | Triple sheared | ||
| IL_4V69_139 | Single bulged C | ||
| IL_4V69_140 | Single bulged A | ||
| IL_4V69_141 | Kink-turn related | ||
| IL_4V69_142 | Minor groove platform, major groove intercalation | ||
| IL_4V69_143 | Major groove intercalation | ||
| IL_4V69_144 | Major groove minor groove platform; mini C-loop | ||
| IL_4V69_187 | No text annotation | ||
| IL_4V69_145 | UAA/GAN related | ||
| IL_4V69_146 | Bulged stacked bases | ||
| IL_4V69_147 | No text annotation | ||
| IL_4V69_148 | Major groove platform | ||
| IL_4V69_149 | No text annotation | ||
| IL_4V69_150 | Single bulged U | ||
| IL_4V69_151 | Minor groove platform | ||
| IL_4V69_152 | Isolated tHS basepair with bulges | ||
| IL_4V69_153 | Isolated non-canonical cWW pair | ||
| IL_4V69_154 | No text annotation | ||
| IL_4V69_155 | Isolated cWH basepair | ||
| IL_4V69_188 | No text annotation | ||
| IL_4V69_156 | No text annotation | ||
| IL_4V69_189 | No text annotation | ||
| IL_4V69_190 | No text annotation | ||
| IL_4V69_157 | Single bulged U | ||
| IL_4V69_158 | No text annotation | ||
| IL_4V69_159 | Double sheared | ||
| IL_4V69_160 | No text annotation | ||
| IL_4V69_161 | Single stack bend | ||
| IL_4V69_162 | Major groove platform | ||
| IL_4V69_163 | Major groove platform | ||
| IL_4V69_164 | Major groove minor groove platform with extra cWW | ||
| IL_4V69_165 | Double sheared with non-canonical cWW | ||
| IL_4V69_166 | Major groove platform | ||
| IL_4V69_167 | Isolated non-canonical cWW with bulges | ||
| IL_4V69_168 | No text annotation | ||
| IL_4V69_169 | Major groove platform with intercalation | ||
| IL_4V69_170 | Single bulged A | ||
| IL_4V69_171 | tSH-tHS-tHW | ||
| IL_4V69_172 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V69_173 | C-loop | ||
| IL_4V69_174 | No text annotation | ||
| IL_4V69_175 | Multiple bulged bases | ||
| IL_4V69_176 | UAA/GAN with extra cWW | ||
| IL_4V69_177 | No text annotation | ||
| IL_4V69_178 | Major groove intercalation | ||
| IL_4V69_179 | Multiple bulged bases with non-canonical cWW | ||
| IL_4V69_180 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V69_001 | No text annotation | ||
| J3_4V69_026 | No text annotation | ||
| J3_4V69_002 | No text annotation | ||
| J3_4V69_027 | No text annotation | ||
| J3_4V69_003 | No text annotation | ||
| J3_4V69_004 | No text annotation | ||
| J3_4V69_028 | No text annotation | ||
| J3_4V69_005 | No text annotation | ||
| J3_4V69_006 | No text annotation | ||
| J3_4V69_007 | No text annotation | ||
| J3_4V69_029 | No text annotation | ||
| J3_4V69_008 | No text annotation | ||
| J3_4V69_009 | No text annotation | ||
| J3_4V69_010 | No text annotation | ||
| J3_4V69_011 | No text annotation | ||
| J3_4V69_030 | No text annotation | ||
| J3_4V69_012 | No text annotation | ||
| J3_4V69_013 | No text annotation | ||
| J3_4V69_014 | No text annotation | ||
| J3_4V69_031 | No text annotation | ||
| J3_4V69_032 | No text annotation | ||
| J3_4V69_015 | No text annotation | ||
| J3_4V69_016 | No text annotation | ||
| J3_4V69_017 | No text annotation | ||
| J3_4V69_018 | No text annotation | ||
| J3_4V69_019 | No text annotation | ||
| J3_4V69_020 | No text annotation | ||
| J3_4V69_033 | No text annotation | ||
| J3_4V69_034 | No text annotation | ||
| J3_4V69_021 | Kink-turn 3-way junction | ||
| J3_4V69_035 | No text annotation | ||
| J3_4V69_022 | No text annotation | ||
| J3_4V69_036 | No text annotation | ||
| J3_4V69_023 | No text annotation | ||
| J3_4V69_024 | No text annotation | ||
| J3_4V69_025 | No text annotation | ||
| J4_4V69_001 | No text annotation | ||
| J4_4V69_002 | No text annotation | ||
| J4_4V69_003 | No text annotation | ||
| J4_4V69_004 | tRNA junction | ||
| J4_4V69_005 | No text annotation | ||
| J4_4V69_006 | tRNA junction | ||
| J4_4V69_007 | No text annotation | ||
| J4_4V69_008 | No text annotation | ||
| J4_4V69_009 | No text annotation | ||
| J4_4V69_010 | No text annotation | ||
| J4_4V69_011 | No text annotation | ||
| J4_4V69_012 | No text annotation | ||
| J4_4V69_013 | No text annotation | ||
| J4_4V69_014 | No text annotation | ||
| J4_4V69_015 | No text annotation | ||
| J4_4V69_016 | No text annotation | ||
| J4_4V69_017 | No text annotation | ||
| J5_4V69_001 | No text annotation | ||
| J5_4V69_002 | No text annotation | ||
| J5_4V69_003 | No text annotation | ||
| J5_4V69_004 | No text annotation | ||
| J5_4V69_005 | No text annotation | ||
| J5_4V69_006 | No text annotation | ||
| J5_4V69_007 | No text annotation | ||
| J5_4V69_008 | No text annotation | ||
| J5_4V69_009 | No text annotation | ||
| J6_4V69_001 | No text annotation | ||
| J6_4V69_002 | No text annotation | ||
| J7_4V69_001 | No text annotation | ||
| J7_4V69_002 | No text annotation |
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