HL_4V69_038

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

4V69|1|AW|C|56

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V69_038 not in the Motif Atlas

Homologous match to HL_5UD5_003

Geometric discrepancy: 0.5183

The information below is about HL_5UD5_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

4V69|1|AW|G|53
4V69|1|AW|U|54
4V69|1|AW|U|55
4V69|1|AW|C|56
4V69|1|AW|G|57
4V69|1|AW|A|58
4V69|1|AW|U|59
4V69|1|AW|U|60
4V69|1|AW|C|61

Current chains

Chain AW

P-site tRNA fMet (Unmodified bases except for Thymine 54)

Nearby chains

Chain B5

50S ribosomal protein L1

Chain BB

Large subunit ribosomal RNA; LSU rRNA