HL_4V69_041

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GUUCGAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V69_041 not in the Motif Atlas

Geometric match to HL_3ZGZ_003

Geometric discrepancy: 0.1726

The information below is about HL_3ZGZ_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

4V69|1|AY|G|53
4V69|1|AY|U|54
4V69|1|AY|U|55
4V69|1|AY|C|56
4V69|1|AY|G|57
4V69|1|AY|A|58
4V69|1|AY|U|59
4V69|1|AY|C|60
4V69|1|AY|C|61

Current chains

Chain AY

A/T-site tRNA Phe

Nearby chains

Chain AZ

Elongation factor Tu

Chain BB

Large subunit ribosomal RNA; LSU rRNA