HL_4V69_054

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

4V69|1|BB|G|329, 4V69|1|BB|A|330, 4V69|1|BB|C|331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V69_054 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.182

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

4V69|1|BB|G|327
4V69|1|BB|U|328
4V69|1|BB|G|329
4V69|1|BB|A|330
4V69|1|BB|C|331
4V69|1|BB|A|332
4V69|1|BB|G|333
4V69|1|BB|C|334
4V69|1|BB|C|335

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24