HL_4V69_079

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

4V69|1|BB|A|1453

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V69_079 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.1849

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

4V69|1|BB|G|1450
4V69|1|BB|C|1451
4V69|1|BB|G|1452
4V69|1|BB|A|1453
4V69|1|BB|C|1454
4V69|1|BB|G|1455
4V69|1|BB|G|1456
4V69|1|BB|U|1457
4V69|1|BB|U|1458
4V69|1|BB|G|1459
4V69|1|BB|U|1460
4V69|1|BB|C|1461

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BN

50S ribosomal protein L17