HL_4V6C_118

3D structure

PDB id

4V6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.19 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6C_118 not in the Motif Atlas

Homologous match to HL_5J7L_015

Geometric discrepancy: 0.0924

The information below is about HL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V6C|1|CA|C|689
4V6C|1|CA|G|690
4V6C|1|CA|G|691
4V6C|1|CA|U|692
4V6C|1|CA|G|693
4V6C|1|CA|A|694
4V6C|1|CA|A|695
4V6C|1|CA|A|696
4V6C|1|CA|U|697
4V6C|1|CA|G|698

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CK

30S ribosomal protein S11

Chain CU

30S ribosomal protein S21

Chain DA

Large subunit ribosomal RNA; LSU rRNA