HL_4V6D_084

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

4V6D|1|BA|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6D_084 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2751

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4V6D|1|BA|A|2142
4V6D|1|BA|C|2143
4V6D|1|BA|G|2144
4V6D|1|BA|C|2145
4V6D|1|BA|C|2146
4V6D|1|BA|A|2147
4V6D|1|BA|G|2148
4V6D|1|BA|U|2149

Current chains

Chain BA

23S rRNA

Nearby chains