HL_4V6D_097

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6D_097 not in the Motif Atlas

Geometric match to HL_3NDB_002

Geometric discrepancy: 0.0947

The information below is about HL_3NDB_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V6D|1|BA|C|2658
4V6D|1|BA|G|2659
4V6D|1|BA|A|2660
4V6D|1|BA|G|2661
4V6D|1|BA|A|2662
4V6D|1|BA|G|2663

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BG

50S ribosomal protein L6