HL_4V6D_112

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6D_112 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0931

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V6D|1|CA|A|320
4V6D|1|CA|A|321
4V6D|1|CA|C|322
4V6D|1|CA|U|323
4V6D|1|CA|G|324
4V6D|1|CA|A|325
4V6D|1|CA|G|326
4V6D|1|CA|A|327
4V6D|1|CA|C|328
4V6D|1|CA|A|329
4V6D|1|CA|C|330
4V6D|1|CA|G|331
4V6D|1|CA|G|332
4V6D|1|CA|U|333

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CT

30S ribosomal protein S20