HL_4V6D_149

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GACACGUGGUAUC

Length

13 nucleotides

Bulged bases

4V6D|1|DA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6D_149 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.2518

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V6D|1|DA|G|381
4V6D|1|DA|A|382
4V6D|1|DA|C|383
4V6D|1|DA|A|384
4V6D|1|DA|C|385
4V6D|1|DA|G|386
4V6D|1|DA|U|387
4V6D|1|DA|G|388
4V6D|1|DA|G|389
4V6D|1|DA|U|390
4V6D|1|DA|A|391
4V6D|1|DA|U|392
4V6D|1|DA|C|393

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DX

50S ribosomal protein L28