HL_4V6D_164

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

4V6D|1|DA|A|983, 4V6D|1|DA|A|984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6D_164 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.1863

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V6D|1|DA|G|978
4V6D|1|DA|A|979
4V6D|1|DA|A|980
4V6D|1|DA|A|981
4V6D|1|DA|C|982
4V6D|1|DA|A|983
4V6D|1|DA|A|984
4V6D|1|DA|C|985

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DQ

50S ribosomal protein L20

Chain DR

50S ribosomal protein L21

Chain DZ

50S ribosomal protein L30