HL_4V6D_210

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

4V6D|1|CA|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6D_210 not in the Motif Atlas

Geometric match to HL_7MLW_004

Geometric discrepancy: 0.2944

The information below is about HL_7MLW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83003.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

4V6D|1|CA|C|418
4V6D|1|CA|C|419
4V6D|1|CA|U|420
4V6D|1|CA|U|421
4V6D|1|CA|C|422
4V6D|1|CA|G|423
4V6D|1|CA|G|424
4V6D|1|CA|G|425

Current chains

Chain CA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain CC

30S ribosomal protein S3

Chain CD

30S ribosomal protein S4