HL_4V6E_018

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

4V6E|1|AA|U|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6E_018 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2724

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4V6E|1|AA|C|840
4V6E|1|AA|C|841
4V6E|1|AA|U|842
4V6E|1|AA|U|843
4V6E|1|AA|G|844
4V6E|1|AA|A|845
4V6E|1|AA|G|846

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AR

30S ribosomal protein S18

Chain CB

30S ribosomal protein S2