HL_4V6E_041

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

4V6E|1|BA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6E_041 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1136

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

4V6E|1|BA|C|305
4V6E|1|BA|U|306
4V6E|1|BA|G|307
4V6E|1|BA|G|308
4V6E|1|BA|A|309
4V6E|1|BA|A|310
4V6E|1|BA|A|311
4V6E|1|BA|G|312

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BU

50S ribosomal protein L24