HL_4V6E_058

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

4V6E|1|BA|U|958, 4V6E|1|BA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6E_058 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1681

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V6E|1|BA|U|955
4V6E|1|BA|G|956
4V6E|1|BA|C|957
4V6E|1|BA|U|958
4V6E|1|BA|A|959
4V6E|1|BA|A|960
4V6E|1|BA|C|961
4V6E|1|BA|G|962

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BM

50S ribosomal protein L16