HL_4V6E_136

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

AUUGAAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6E_136 not in the Motif Atlas

Geometric match to HL_7U2I_104

Geometric discrepancy: 0.1522

The information below is about HL_7U2I_104

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.6

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

4V6E|1|CV|A|31
4V6E|1|CV|U|32
4V6E|1|CV|U|33
4V6E|1|CV|G|34
4V6E|1|CV|A|35
4V6E|1|CV|A|36
4V6E|1|CV|A|37
4V6E|1|CV|A|38
4V6E|1|CV|U|39

Current chains

Chain CV

P-site tRNA ASL fragment

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CI

30S ribosomal protein S9

Chain CW

messenger RNA