HL_4V6E_161

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

GCAACAACC

Length

9 nucleotides

Bulged bases

4V6E|1|DA|A|878

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6E_161 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3524

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V6E|1|DA|G|875
4V6E|1|DA|C|876
4V6E|1|DA|A|877
4V6E|1|DA|A|878
4V6E|1|DA|C|898
4V6E|1|DA|A|899
4V6E|1|DA|A|900
4V6E|1|DA|C|901
4V6E|1|DA|C|902

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L16