HL_4V6E_176

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4V6E|1|DA|A|1616, 4V6E|1|DA|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6E_176 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1234

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4V6E|1|DA|C|1612
4V6E|1|DA|G|1613
4V6E|1|DA|A|1614
4V6E|1|DA|C|1615
4V6E|1|DA|A|1616
4V6E|1|DA|C|1617
4V6E|1|DA|A|1618
4V6E|1|DA|G|1619

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DS

50S ribosomal protein L22