HL_4V6E_196

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

4V6E|1|DA|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6E_196 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.2768

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V6E|1|DA|A|2471
4V6E|1|DA|G|2472
4V6E|1|DA|U|2473
4V6E|1|DA|U|2474
4V6E|1|DA|C|2475
4V6E|1|DA|A|2476
4V6E|1|DA|U|2477
4V6E|1|DA|A|2478
4V6E|1|DA|U|2479

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L36

Chain DG

50S ribosomal protein L6

Chain DM

50S ribosomal protein L16