HL_4V6E_208
3D structure
- PDB id
- 4V6E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.71 Å
Loop
- Sequence
- GAUUGAAAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6E_208 not in the Motif Atlas
- Geometric match to HL_5IB8_208
- Geometric discrepancy: 0.2676
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36684.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V6E|1|AV|G|30
4V6E|1|AV|A|31
4V6E|1|AV|U|32
4V6E|1|AV|U|33
4V6E|1|AV|G|34
4V6E|1|AV|A|35
4V6E|1|AV|A|36
4V6E|1|AV|A|37
4V6E|1|AV|A|38
4V6E|1|AV|U|39
4V6E|1|AV|C|40
Current chains
- Chain AV
- P-site tRNA ASL fragment
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AI
- 30S ribosomal protein S9
- Chain AW
- messenger RNA
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