HL_4V6F_002

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGUAGCGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6F_002 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2368

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4V6F|1|AA|C|87
4V6F|1|AA|G|88
4V6F|1|AA|G|89
4V6F|1|AA|U|90
4V6F|1|AA|A|91
4V6F|1|AA|G|92
4V6F|1|AA|C|93
4V6F|1|AA|G|94
4V6F|1|AA|G|95

Current chains

Chain AA

23S RIBOSOMAL RNA

Nearby chains

Chain AU

50S RIBOSOMAL PROTEIN L24

Chain AW

50S RIBOSOMAL PROTEIN L29