HL_4V6F_068

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V6F|1|AA|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6F_068 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.3028

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4V6F|1|AA|C|2745
4V6F|1|AA|U|2746
4V6F|1|AA|G|2747
4V6F|1|AA|A|2748
4V6F|1|AA|A|2749
4V6F|1|AA|A|2750
4V6F|1|AA|G|2751
4V6F|1|AA|C|2752
4V6F|1|AA|A|2753
4V6F|1|AA|U|2754
4V6F|1|AA|C|2755
4V6F|1|AA|U|2756
4V6F|1|AA|A|2757
4V6F|1|AA|A|2758
4V6F|1|AA|G|2759

Current chains

Chain AA

23S RIBOSOMAL RNA

Nearby chains

Chain AH

50S RIBOSOMAL PROTEIN L6

Chain AM

50S RIBOSOMAL PROTEIN L13