HL_4V6F_080

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6F_080 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.1046

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V6F|1|BA|U|296
4V6F|1|BA|G|297
4V6F|1|BA|A|298
4V6F|1|BA|G|299
4V6F|1|BA|A|300
4V6F|1|BA|G|301

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BG

30S ribosomal protein S4

Chain BH

30S ribosomal protein S5

Chain BT

30S ribosomal protein S17