HL_4V6F_153
3D structure
- PDB id
- 4V6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation complex of the 70S ribosome with three tRNAs and mRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGUCGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 4V6F|1|CD|U|16, 4V6F|1|CD|C|17, 4V6F|1|CD|G|18, 4V6F|1|CD|G|19, 4V6F|1|CD|U|20, 4V6F|1|CD|A|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6F_153 not in the Motif Atlas
- Homologous match to HL_6ORD_035
- Geometric discrepancy: 0.2479
- The information below is about HL_6ORD_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07951.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V6F|1|CD|C|13
4V6F|1|CD|A|14
4V6F|1|CD|G|15
4V6F|1|CD|U|16
4V6F|1|CD|C|17
4V6F|1|CD|G|18
4V6F|1|CD|G|19
4V6F|1|CD|U|20
4V6F|1|CD|A|21
4V6F|1|CD|G|22
Current chains
- Chain CD
- TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: