HL_4V6F_182

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

4V6F|1|DA|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6F_182 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1924

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V6F|1|DA|C|884
4V6F|1|DA|C|885
4V6F|1|DA|C|886
4V6F|1|DA|A|887
4V6F|1|DA|C|888
4V6F|1|DA|C|889
4V6F|1|DA|A|890
4V6F|1|DA|G|892

Current chains

Chain DA

23S RRNA

Nearby chains

Chain CB

Transfer RNA; tRNA

Chain CP

30S ribosomal protein S13

Chain CV

30S ribosomal protein S19