HL_4V6F_183

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

4V6F|1|DA|U|958, 4V6F|1|DA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6F_183 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.0967

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V6F|1|DA|C|955
4V6F|1|DA|G|956
4V6F|1|DA|A|957
4V6F|1|DA|U|958
4V6F|1|DA|A|959
4V6F|1|DA|A|960
4V6F|1|DA|C|961
4V6F|1|DA|G|962

Current chains

Chain DA

23S RRNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DP

50S RIBOSOMAL PROTEIN L16