HL_4V6F_198

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4V6F|1|DA|A|1614, 4V6F|1|DA|A|1616, 4V6F|1|DA|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6F_198 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.0866

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4V6F|1|DA|C|1612
4V6F|1|DA|G|1613
4V6F|1|DA|A|1614
4V6F|1|DA|C|1615
4V6F|1|DA|A|1616
4V6F|1|DA|C|1617
4V6F|1|DA|A|1618
4V6F|1|DA|G|1619

Current chains

Chain DA

23S RRNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34

Chain DS

50S RIBOSOMAL PROTEIN L22