HL_4V6G_039

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGCGAUAA

Length

8 nucleotides

Bulged bases

4V6G|1|BA|U|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6G_039 not in the Motif Atlas

Geometric match to HL_4WF9_001

Geometric discrepancy: 0.2498

The information below is about HL_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08550.2

Basepair signature

cWW-F-F-F-cSH

Number of instances in this motif group

3

Unit IDs

4V6G|1|BA|U|67
4V6G|1|BA|G|68
4V6G|1|BA|C|69
4V6G|1|BA|G|70
4V6G|1|BA|A|71
4V6G|1|BA|U|72
4V6G|1|BA|A|73
4V6G|1|BA|A|74

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BT

50S ribosomal protein L23

Chain BW

50S ribosomal protein L29