HL_4V6G_111

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUUGAUCCUGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6G_111 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.0827

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.1

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V6G|1|CA|U|12
4V6G|1|CA|U|13
4V6G|1|CA|U|14
4V6G|1|CA|G|15
4V6G|1|CA|A|16
4V6G|1|CA|U|17
4V6G|1|CA|C|18
4V6G|1|CA|C|19
4V6G|1|CA|U|20
4V6G|1|CA|G|21
4V6G|1|CA|G|22

Current chains

Chain CA

16S RRNA (E.COLI NUMBERING)

Nearby chains

Chain CH

30S RIBOSOMAL PROTEIN S5