HL_4V6G_141

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V6G|1|CA|U|1450, 4V6G|1|CA|A|1451, 4V6G|1|CA|G|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6G_141 not in the Motif Atlas

Geometric match to HL_8VTW_051

Geometric discrepancy: 0.3534

The information below is about HL_8VTW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

4V6G|1|CA|C|1449
4V6G|1|CA|U|1450
4V6G|1|CA|A|1451
4V6G|1|CA|C|1452
4V6G|1|CA|G|1453
4V6G|1|CA|G|1454

Current chains

Chain CA

16S RRNA (E.COLI NUMBERING)

Nearby chains

Chain CW

30S RIBOSOMAL PROTEIN S20