HL_4V6G_158

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6G_158 not in the Motif Atlas

Geometric match to HL_4UYK_003

Geometric discrepancy: 0.2499

The information below is about HL_4UYK_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

4V6G|1|DA|A|225
4V6G|1|DA|G|226
4V6G|1|DA|A|227
4V6G|1|DA|A|228
4V6G|1|DA|A|229
4V6G|1|DA|U|230

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DO

50S ribosomal protein L15