HL_4V6G_180

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4V6G|1|DA|A|1067, 4V6G|1|DA|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6G_180 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.4279

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V6G|1|DA|C|1064
4V6G|1|DA|U|1065
4V6G|1|DA|U|1066
4V6G|1|DA|A|1067
4V6G|1|DA|G|1068
4V6G|1|DA|A|1069
4V6G|1|DA|A|1070
4V6G|1|DA|G|1071
4V6G|1|DA|C|1072
4V6G|1|DA|A|1073
4V6G|1|DA|G|1074

Current chains

Chain DA

23S ribosomal RNA

Nearby chains