HL_4V6I_012

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GCAGCCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|CA|G|568
4V6I|1|CA|C|569
4V6I|1|CA|A|570
4V6I|1|CA|G|571
4V6I|1|CA|C|572
4V6I|1|CA|C|573
4V6I|1|CA|G|574
4V6I|1|CA|C|575

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AC

40S ribosomal protein rpS9 (S4p)

Chain AL

40S ribosomal protein rpS23 (S12p)

Chain CC

MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')