4V6I Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_4V6I_001 | No text annotation | ||
HL_4V6I_113 | No text annotation | ||
HL_4V6I_002 | No text annotation | ||
HL_4V6I_003 | No text annotation | ||
HL_4V6I_004 | No text annotation | ||
HL_4V6I_005 | No text annotation | ||
HL_4V6I_006 | No text annotation | ||
HL_4V6I_122 | No text annotation | ||
HL_4V6I_007 | No text annotation | ||
HL_4V6I_008 | No text annotation | ||
HL_4V6I_009 | No text annotation | ||
HL_4V6I_010 | No text annotation | ||
HL_4V6I_011 | No text annotation | ||
HL_4V6I_012 | No text annotation | ||
HL_4V6I_013 | No text annotation | ||
HL_4V6I_014 | Pseudoknot geometry | ||
HL_4V6I_015 | No text annotation | ||
HL_4V6I_114 | No text annotation | ||
HL_4V6I_016 | GNRA | ||
HL_4V6I_017 | No text annotation | ||
HL_4V6I_018 | No text annotation | ||
HL_4V6I_019 | GNRA | ||
HL_4V6I_020 | GNRA | ||
HL_4V6I_021 | No text annotation | ||
HL_4V6I_115 | No text annotation | ||
HL_4V6I_022 | No text annotation | ||
HL_4V6I_023 | GNRA | ||
HL_4V6I_024 | No text annotation | ||
HL_4V6I_025 | No text annotation | ||
HL_4V6I_026 | No text annotation | ||
HL_4V6I_027 | GNRA | ||
HL_4V6I_028 | No text annotation | ||
HL_4V6I_029 | No text annotation | ||
HL_4V6I_123 | No text annotation | ||
HL_4V6I_030 | No text annotation | ||
HL_4V6I_031 | GNRA variation | ||
HL_4V6I_032 | No text annotation | ||
HL_4V6I_033 | tRNA anticodon loop | ||
HL_4V6I_034 | T-loop with 2 stacked bulged bases | ||
HL_4V6I_035 | No text annotation | ||
HL_4V6I_036 | No text annotation | ||
HL_4V6I_037 | No text annotation | ||
HL_4V6I_038 | No text annotation | ||
HL_4V6I_039 | T-loop with 2 stacked bulged bases | ||
HL_4V6I_040 | T-loop with unstacked turn | ||
HL_4V6I_041 | No text annotation | ||
HL_4V6I_042 | Pseudoknot geometry | ||
HL_4V6I_043 | GNRA | ||
HL_4V6I_044 | GNRA | ||
HL_4V6I_045 | No text annotation | ||
HL_4V6I_046 | No text annotation | ||
HL_4V6I_047 | GNRA | ||
HL_4V6I_048 | T-loop with 2 stacked bulged bases | ||
HL_4V6I_049 | UNCG variation | ||
HL_4V6I_050 | GNRA | ||
HL_4V6I_051 | No text annotation | ||
HL_4V6I_052 | No text annotation | ||
HL_4V6I_053 | GNRA | ||
HL_4V6I_054 | No text annotation | ||
HL_4V6I_055 | No text annotation | ||
HL_4V6I_056 | No text annotation | ||
HL_4V6I_116 | No text annotation | ||
HL_4V6I_117 | No text annotation | ||
HL_4V6I_057 | No text annotation | ||
HL_4V6I_118 | No text annotation | ||
HL_4V6I_058 | No text annotation | ||
HL_4V6I_059 | GNRA | ||
HL_4V6I_060 | No text annotation | ||
HL_4V6I_061 | No text annotation | ||
HL_4V6I_062 | GNRA wlth tandem sheared | ||
HL_4V6I_063 | No text annotation | ||
HL_4V6I_119 | No text annotation | ||
HL_4V6I_064 | GNRA | ||
HL_4V6I_065 | T-loop with 2 stacked bulged bases | ||
HL_4V6I_066 | Pseudoknot geometry with 3' bulge | ||
HL_4V6I_067 | GNRA variation | ||
HL_4V6I_068 | No text annotation | ||
HL_4V6I_069 | No text annotation | ||
HL_4V6I_070 | No text annotation | ||
HL_4V6I_071 | No text annotation | ||
HL_4V6I_120 | No text annotation | ||
HL_4V6I_072 | Other HL | ||
HL_4V6I_073 | GNRA | ||
HL_4V6I_074 | No text annotation | ||
HL_4V6I_075 | No text annotation | ||
HL_4V6I_076 | No text annotation | ||
HL_4V6I_077 | UNCG | ||
HL_4V6I_078 | No text annotation | ||
HL_4V6I_079 | No text annotation | ||
HL_4V6I_080 | No text annotation | ||
HL_4V6I_081 | No text annotation | ||
HL_4V6I_082 | GNRA | ||
HL_4V6I_083 | GNRA | ||
HL_4V6I_084 | No text annotation | ||
HL_4V6I_085 | No text annotation | ||
HL_4V6I_086 | No text annotation | ||
HL_4V6I_087 | No text annotation | ||
HL_4V6I_088 | GNRA with extra cWW | ||
HL_4V6I_089 | Mini UNCG | ||
HL_4V6I_090 | No text annotation | ||
HL_4V6I_091 | No text annotation | ||
HL_4V6I_092 | No text annotation | ||
HL_4V6I_093 | Pseudoknot geometry | ||
HL_4V6I_094 | No text annotation | ||
HL_4V6I_095 | GNRA | ||
HL_4V6I_096 | Pseudoknot geometry | ||
HL_4V6I_097 | No text annotation | ||
HL_4V6I_098 | No text annotation | ||
HL_4V6I_099 | No text annotation | ||
HL_4V6I_100 | GNRA | ||
HL_4V6I_101 | GNRA | ||
HL_4V6I_102 | Ribsomal LSU H95 | ||
HL_4V6I_103 | No text annotation | ||
HL_4V6I_104 | No text annotation | ||
HL_4V6I_105 | tRNA anticodon loop | ||
HL_4V6I_106 | No text annotation | ||
HL_4V6I_107 | No text annotation | ||
HL_4V6I_108 | Pseudoknot with intercalation | ||
HL_4V6I_109 | No text annotation | ||
HL_4V6I_110 | No text annotation | ||
HL_4V6I_121 | No text annotation | ||
HL_4V6I_111 | No text annotation | ||
HL_4V6I_112 | GNRA |
Valid loops
No loops found
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_4V6I_001 | Isolated non-canonical cWW pair | ||
IL_4V6I_002 | Triple sheared related | ||
IL_4V6I_003 | No text annotation | ||
IL_4V6I_208 | No text annotation | ||
IL_4V6I_004 | Minor groove platform | ||
IL_4V6I_005 | Multiple bulged bases | ||
IL_4V6I_006 | No text annotation | ||
IL_4V6I_007 | No text annotation | ||
IL_4V6I_008 | Multiple bulged bases | ||
IL_4V6I_009 | No text annotation | ||
IL_4V6I_010 | No text annotation | ||
IL_4V6I_011 | Tandem non-canonical cWW pairs | ||
IL_4V6I_209 | No text annotation | ||
IL_4V6I_210 | No text annotation | ||
IL_4V6I_012 | Single stack bend | ||
IL_4V6I_211 | Kink-turn with non-sequential stacking | ||
IL_4V6I_013 | No text annotation | ||
IL_4V6I_014 | No text annotation | ||
IL_4V6I_015 | No text annotation | ||
IL_4V6I_255 | No text annotation | ||
IL_4V6I_212 | Tandem non-canonical cWW pairs | ||
IL_4V6I_016 | Isolated cWH basepair | ||
IL_4V6I_017 | Isolated near basepair | ||
IL_4V6I_018 | Single bulged U | ||
IL_4V6I_019 | C-loop | ||
IL_4V6I_020 | Single bulged G | ||
IL_4V6I_021 | Single stack bend | ||
IL_4V6I_022 | Decoding loop related | ||
IL_4V6I_023 | Kink-turn related | ||
IL_4V6I_024 | No text annotation | ||
IL_4V6I_025 | Isolated non-canonical cWW pair | ||
IL_4V6I_213 | tSH-tHW-tHS-cWW | ||
IL_4V6I_026 | tSH-tHW-tHS | ||
IL_4V6I_214 | No text annotation | ||
IL_4V6I_027 | Tandem non-canonical cWW pairs | ||
IL_4V6I_028 | Major groove platform | ||
IL_4V6I_029 | tSH-tHW | ||
IL_4V6I_030 | Tandem non-canonical cWW pairs | ||
IL_4V6I_215 | No text annotation | ||
IL_4V6I_031 | Tandem non-canonical cWW pairs | ||
IL_4V6I_032 | No text annotation | ||
IL_4V6I_216 | No text annotation | ||
IL_4V6I_217 | No text annotation | ||
IL_4V6I_033 | Other IL | ||
IL_4V6I_034 | tSH-tHW-tHS | ||
IL_4V6I_218 | No text annotation | ||
IL_4V6I_035 | No text annotation | ||
IL_4V6I_036 | Single stack bend | ||
IL_4V6I_219 | Single stack bend | ||
IL_4V6I_037 | No text annotation | ||
IL_4V6I_220 | No text annotation | ||
IL_4V6I_038 | No text annotation | ||
IL_4V6I_256 | Single bulged A | ||
IL_4V6I_221 | Tandem non-canonical cWW pairs | ||
IL_4V6I_039 | No text annotation | ||
IL_4V6I_222 | Single bulged G | ||
IL_4V6I_040 | No text annotation | ||
IL_4V6I_041 | Isolated non-canonical cWW pair | ||
IL_4V6I_223 | Tandem non-canonical cWW pairs | ||
IL_4V6I_042 | Minor groove platform | ||
IL_4V6I_043 | Single bulged U | ||
IL_4V6I_044 | Isolated non-canonical cWW with bulges | ||
IL_4V6I_224 | Multiple bulged bases | ||
IL_4V6I_225 | No text annotation | ||
IL_4V6I_045 | No text annotation | ||
IL_4V6I_046 | Single bulged A | ||
IL_4V6I_226 | Isolated non-canonical cWW pair | ||
IL_4V6I_047 | Tandem non-canonical cWW pairs | ||
IL_4V6I_227 | No text annotation | ||
IL_4V6I_048 | Multiple bulged bases | ||
IL_4V6I_049 | Single stack bend | ||
IL_4V6I_050 | No text annotation | ||
IL_4V6I_051 | No text annotation | ||
IL_4V6I_228 | No text annotation | ||
IL_4V6I_052 | No text annotation | ||
IL_4V6I_229 | No text annotation | ||
IL_4V6I_053 | No text annotation | ||
IL_4V6I_230 | No text annotation | ||
IL_4V6I_054 | No text annotation | ||
IL_4V6I_055 | Isolated non-canonical cWW pair | ||
IL_4V6I_056 | No text annotation | ||
IL_4V6I_057 | No text annotation | ||
IL_4V6I_058 | Double sheared | ||
IL_4V6I_059 | Single stack bend | ||
IL_4V6I_060 | Tandem non-canonical cWW pairs | ||
IL_4V6I_231 | Isolated non-canonical cWW pair | ||
IL_4V6I_061 | Double sheared | ||
IL_4V6I_062 | Isolated non-canonical cWW pair | ||
IL_4V6I_063 | Tandem non-canonical cWW pairs | ||
IL_4V6I_064 | Triple sheared | ||
IL_4V6I_065 | Other IL | ||
IL_4V6I_066 | Isolated non-canonical cWW pair | ||
IL_4V6I_067 | Single stack bend | ||
IL_4V6I_068 | Single stack bend | ||
IL_4V6I_069 | Single stack bend | ||
IL_4V6I_070 | Not an internal loop | ||
IL_4V6I_071 | 8x7 Sarcin-Ricin; G-bulge | ||
IL_4V6I_072 | No text annotation | ||
IL_4V6I_073 | Isolated non-canonical cWW pair | ||
IL_4V6I_074 | No text annotation | ||
IL_4V6I_075 | No text annotation | ||
IL_4V6I_076 | No text annotation | ||
IL_4V6I_077 | No text annotation | ||
IL_4V6I_232 | No text annotation | ||
IL_4V6I_078 | No text annotation | ||
IL_4V6I_079 | Single bulged U | ||
IL_4V6I_080 | Major groove platform with extra cWW | ||
IL_4V6I_081 | Isolated non-canonical cWW pair | ||
IL_4V6I_233 | Single bulged A | ||
IL_4V6I_082 | No text annotation | ||
IL_4V6I_083 | Triple sheared with non-canonical cWW | ||
IL_4V6I_084 | Isolated non-canonical cWW pair | ||
IL_4V6I_234 | No text annotation | ||
IL_4V6I_085 | No text annotation | ||
IL_4V6I_086 | Single stack bend | ||
IL_4V6I_087 | No text annotation | ||
IL_4V6I_235 | No text annotation | ||
IL_4V6I_088 | No text annotation | ||
IL_4V6I_089 | No text annotation | ||
IL_4V6I_090 | No text annotation | ||
IL_4V6I_091 | No text annotation | ||
IL_4V6I_092 | Isolated non-canonical cWW pair | ||
IL_4V6I_093 | No text annotation | ||
IL_4V6I_094 | Single stack bend | ||
IL_4V6I_236 | No text annotation | ||
IL_4V6I_095 | Isolated non-canonical cWW pair | ||
IL_4V6I_237 | Single stack bend | ||
IL_4V6I_096 | No text annotation | ||
IL_4V6I_238 | Double sheared with non-canonical cWW | ||
IL_4V6I_097 | No text annotation | ||
IL_4V6I_098 | Isolated non-canonical cWW pair | ||
IL_4V6I_099 | tHW-tHW cross-strand stack | ||
IL_4V6I_100 | Single bulged G | ||
IL_4V6I_101 | Triple sheared with non-canonical cWW | ||
IL_4V6I_102 | No text annotation | ||
IL_4V6I_103 | Single bulged U | ||
IL_4V6I_104 | No text annotation | ||
IL_4V6I_105 | Isolated non-canonical cWW pair | ||
IL_4V6I_106 | No text annotation | ||
IL_4V6I_107 | No text annotation | ||
IL_4V6I_108 | No text annotation | ||
IL_4V6I_109 | Stack and bulge | ||
IL_4V6I_110 | No text annotation | ||
IL_4V6I_111 | Single stack bend | ||
IL_4V6I_112 | No text annotation | ||
IL_4V6I_113 | Double sheared | ||
IL_4V6I_114 | No text annotation | ||
IL_4V6I_115 | No text annotation | ||
IL_4V6I_116 | No text annotation | ||
IL_4V6I_117 | Isolated non-canonical cWW pair | ||
IL_4V6I_118 | UAA/GAN | ||
IL_4V6I_119 | SSU/LSU pseudoknot | ||
IL_4V6I_120 | Single bulged U | ||
IL_4V6I_121 | No text annotation | ||
IL_4V6I_239 | No text annotation | ||
IL_4V6I_122 | Isolated non-canonical cWW pair | ||
IL_4V6I_123 | Kink-turn | ||
IL_4V6I_124 | No text annotation | ||
IL_4V6I_125 | Major groove platform with extra cWW | ||
IL_4V6I_126 | No text annotation | ||
IL_4V6I_127 | Kink-turn | ||
IL_4V6I_128 | Isolated non-canonical cWW pair | ||
IL_4V6I_129 | Isolated non-canonical cWW pair | ||
IL_4V6I_130 | Isolated cWH basepair | ||
IL_4V6I_240 | 7x6 Sarcin-Ricin; G-bulge | ||
IL_4V6I_131 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
IL_4V6I_132 | Major groove platform; stack outside cWW | ||
IL_4V6I_133 | C-loop | ||
IL_4V6I_134 | UAA/GAN | ||
IL_4V6I_135 | No text annotation | ||
IL_4V6I_136 | Triple sheared | ||
IL_4V6I_137 | Isolated non-canonical cWW pair | ||
IL_4V6I_138 | No text annotation | ||
IL_4V6I_241 | No text annotation | ||
IL_4V6I_257 | No text annotation | ||
IL_4V6I_139 | No text annotation | ||
IL_4V6I_242 | No text annotation | ||
IL_4V6I_140 | No text annotation | ||
IL_4V6I_141 | Tandem non-canonical cWW pairs | ||
IL_4V6I_243 | No text annotation | ||
IL_4V6I_142 | No text annotation | ||
IL_4V6I_143 | No text annotation | ||
IL_4V6I_144 | No text annotation | ||
IL_4V6I_145 | Major groove platform; stack outside cWW | ||
IL_4V6I_244 | No text annotation | ||
IL_4V6I_146 | No text annotation | ||
IL_4V6I_147 | tSH-tSH-tHH-tHS | ||
IL_4V6I_148 | Isolated non-canonical cWW pair | ||
IL_4V6I_149 | No text annotation | ||
IL_4V6I_245 | No text annotation | ||
IL_4V6I_150 | No text annotation | ||
IL_4V6I_151 | No text annotation | ||
IL_4V6I_152 | Single stack bend | ||
IL_4V6I_153 | Tandem non-canonical cWW pairs | ||
IL_4V6I_154 | Isolated non-canonical cWW pair | ||
IL_4V6I_246 | Tandem non-canonical cWW pairs | ||
IL_4V6I_247 | Single bulged A | ||
IL_4V6I_155 | Other IL | ||
IL_4V6I_156 | Kink-turn related | ||
IL_4V6I_157 | Major groove intercalation | ||
IL_4V6I_158 | Major groove intercalation | ||
IL_4V6I_159 | Single stack bend | ||
IL_4V6I_248 | Minor groove platform, major groove intercalation | ||
IL_4V6I_160 | No text annotation | ||
IL_4V6I_161 | No text annotation | ||
IL_4V6I_162 | Bulged stacked bases | ||
IL_4V6I_163 | No text annotation | ||
IL_4V6I_164 | No text annotation | ||
IL_4V6I_165 | Major groove platform with intercalation | ||
IL_4V6I_166 | Single bulged U | ||
IL_4V6I_167 | Minor groove platform | ||
IL_4V6I_168 | Isolated tHS basepair with bulges | ||
IL_4V6I_169 | No text annotation | ||
IL_4V6I_170 | No text annotation | ||
IL_4V6I_171 | No text annotation | ||
IL_4V6I_249 | No text annotation | ||
IL_4V6I_172 | Isolated tHS basepair with bulges | ||
IL_4V6I_173 | No text annotation | ||
IL_4V6I_174 | Single stack bend | ||
IL_4V6I_175 | Major groove platform | ||
IL_4V6I_176 | Isolated non-canonical cWW pair | ||
IL_4V6I_177 | Major groove platform | ||
IL_4V6I_250 | Major groove minor groove platform with extra cWW | ||
IL_4V6I_178 | No text annotation | ||
IL_4V6I_179 | Triple sheared | ||
IL_4V6I_180 | Major groove platform | ||
IL_4V6I_181 | Isolated non-canonical cWW with bulges | ||
IL_4V6I_182 | No text annotation | ||
IL_4V6I_183 | Not an internal loop | ||
IL_4V6I_184 | Major groove platform with intercalation | ||
IL_4V6I_185 | Isolated non-canonical cWW pair | ||
IL_4V6I_186 | Single bulged A | ||
IL_4V6I_187 | No text annotation | ||
IL_4V6I_188 | Isolated non-canonical cWW pair | ||
IL_4V6I_189 | Sarcin-Ricin target in LSU H95; G-bulge | ||
IL_4V6I_190 | Major groove minor groove platform with tHH | ||
IL_4V6I_251 | No text annotation | ||
IL_4V6I_191 | No text annotation | ||
IL_4V6I_192 | No text annotation | ||
IL_4V6I_193 | UAA/GAN | ||
IL_4V6I_194 | Isolated non-canonical cWW pair | ||
IL_4V6I_195 | No text annotation | ||
IL_4V6I_196 | No text annotation | ||
IL_4V6I_197 | No text annotation | ||
IL_4V6I_198 | Tandem non-canonical cWW pairs | ||
IL_4V6I_199 | Single stack bend | ||
IL_4V6I_200 | No text annotation | ||
IL_4V6I_201 | tHS double platform | ||
IL_4V6I_202 | No text annotation | ||
IL_4V6I_203 | No text annotation | ||
IL_4V6I_252 | No text annotation | ||
IL_4V6I_253 | Double sheared | ||
IL_4V6I_204 | No text annotation | ||
IL_4V6I_254 | No text annotation | ||
IL_4V6I_205 | No text annotation | ||
IL_4V6I_206 | Symmetric double minor groove platform | ||
IL_4V6I_207 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_4V6I_034 | 1/DA/501:503, 1/DA/588:593, 1/DA/609:612 | No text annotation | ||
J3_4V6I_039 | 1/DA/3168:3211, 1/DA/3224:3229, 1/DA/3258:3282 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_4V6I_001 | No text annotation | ||
J3_4V6I_002 | No text annotation | ||
J3_4V6I_003 | No text annotation | ||
J3_4V6I_040 | No text annotation | ||
J3_4V6I_029 | No text annotation | ||
J3_4V6I_004 | No text annotation | ||
J3_4V6I_005 | No text annotation | ||
J3_4V6I_006 | No text annotation | ||
J3_4V6I_041 | No text annotation | ||
J3_4V6I_007 | No text annotation | ||
J3_4V6I_030 | No text annotation | ||
J3_4V6I_008 | No text annotation | ||
J3_4V6I_009 | No text annotation | ||
J3_4V6I_010 | No text annotation | ||
J3_4V6I_011 | No text annotation | ||
J3_4V6I_031 | No text annotation | ||
J3_4V6I_012 | No text annotation | ||
J3_4V6I_032 | No text annotation | ||
J3_4V6I_033 | No text annotation | ||
J3_4V6I_013 | No text annotation | ||
J3_4V6I_014 | No text annotation | ||
J3_4V6I_035 | No text annotation | ||
J3_4V6I_015 | No text annotation | ||
J3_4V6I_016 | No text annotation | ||
J3_4V6I_017 | No text annotation | ||
J3_4V6I_018 | No text annotation | ||
J3_4V6I_019 | No text annotation | ||
J3_4V6I_020 | No text annotation | ||
J3_4V6I_021 | No text annotation | ||
J3_4V6I_036 | No text annotation | ||
J3_4V6I_037 | No text annotation | ||
J3_4V6I_038 | No text annotation | ||
J3_4V6I_022 | No text annotation | ||
J3_4V6I_023 | No text annotation | ||
J3_4V6I_024 | No text annotation | ||
J3_4V6I_025 | No text annotation | ||
J3_4V6I_026 | No text annotation | ||
J3_4V6I_027 | No text annotation | ||
J3_4V6I_028 | No text annotation | ||
J4_4V6I_001 | No text annotation | ||
J4_4V6I_002 | No text annotation | ||
J4_4V6I_003 | No text annotation | ||
J4_4V6I_004 | No text annotation | ||
J4_4V6I_005 | No text annotation | ||
J4_4V6I_006 | No text annotation | ||
J4_4V6I_007 | No text annotation | ||
J4_4V6I_008 | No text annotation | ||
J4_4V6I_009 | No text annotation | ||
J4_4V6I_010 | No text annotation | ||
J4_4V6I_011 | No text annotation | ||
J4_4V6I_012 | No text annotation | ||
J4_4V6I_013 | No text annotation | ||
J5_4V6I_007 | No text annotation | ||
J5_4V6I_001 | No text annotation | ||
J5_4V6I_002 | No text annotation | ||
J5_4V6I_003 | No text annotation | ||
J5_4V6I_004 | No text annotation | ||
J5_4V6I_005 | No text annotation | ||
J5_4V6I_006 | No text annotation | ||
J6_4V6I_001 | No text annotation | ||
J7_4V6I_002 | No text annotation | ||
J7_4V6I_001 | No text annotation |
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