Valid loops

No loops found

Problematic loops

#loop idProblemSequence
HL_4V6I_001No text annotation
HL_4V6I_113No text annotation
HL_4V6I_002No text annotation
HL_4V6I_003No text annotation
HL_4V6I_004No text annotation
HL_4V6I_005No text annotation
HL_4V6I_006No text annotation
HL_4V6I_122No text annotation
HL_4V6I_007No text annotation
HL_4V6I_008No text annotation
HL_4V6I_009No text annotation
HL_4V6I_010No text annotation
HL_4V6I_011No text annotation
HL_4V6I_012No text annotation
HL_4V6I_013No text annotation
HL_4V6I_014Pseudoknot geometry
HL_4V6I_015No text annotation
HL_4V6I_114No text annotation
HL_4V6I_016GNRA
HL_4V6I_017No text annotation
HL_4V6I_018No text annotation
HL_4V6I_019GNRA
HL_4V6I_020GNRA
HL_4V6I_021No text annotation
HL_4V6I_115No text annotation
HL_4V6I_022No text annotation
HL_4V6I_023GNRA
HL_4V6I_024No text annotation
HL_4V6I_025No text annotation
HL_4V6I_026No text annotation
HL_4V6I_027GNRA
HL_4V6I_028No text annotation
HL_4V6I_029No text annotation
HL_4V6I_123No text annotation
HL_4V6I_030No text annotation
HL_4V6I_031GNRA variation
HL_4V6I_032No text annotation
HL_4V6I_033tRNA anticodon loop
HL_4V6I_034T-loop with 2 stacked bulged bases
HL_4V6I_035No text annotation
HL_4V6I_036No text annotation
HL_4V6I_037No text annotation
HL_4V6I_038No text annotation
HL_4V6I_039T-loop with 2 stacked bulged bases
HL_4V6I_040T-loop with unstacked turn
HL_4V6I_041No text annotation
HL_4V6I_042Pseudoknot geometry
HL_4V6I_043GNRA
HL_4V6I_044GNRA
HL_4V6I_045No text annotation
HL_4V6I_046No text annotation
HL_4V6I_047GNRA
HL_4V6I_048T-loop with 2 stacked bulged bases
HL_4V6I_049UNCG variation
HL_4V6I_050GNRA
HL_4V6I_051No text annotation
HL_4V6I_052No text annotation
HL_4V6I_053GNRA
HL_4V6I_054No text annotation
HL_4V6I_055No text annotation
HL_4V6I_056No text annotation
HL_4V6I_116No text annotation
HL_4V6I_117No text annotation
HL_4V6I_057No text annotation
HL_4V6I_118No text annotation
HL_4V6I_058No text annotation
HL_4V6I_059GNRA
HL_4V6I_060No text annotation
HL_4V6I_061No text annotation
HL_4V6I_062GNRA wlth tandem sheared
HL_4V6I_063No text annotation
HL_4V6I_119No text annotation
HL_4V6I_064GNRA
HL_4V6I_065T-loop with 2 stacked bulged bases
HL_4V6I_066Pseudoknot geometry with 3' bulge
HL_4V6I_067GNRA variation
HL_4V6I_068No text annotation
HL_4V6I_069No text annotation
HL_4V6I_070No text annotation
HL_4V6I_071No text annotation
HL_4V6I_120No text annotation
HL_4V6I_072Other HL
HL_4V6I_073GNRA
HL_4V6I_074No text annotation
HL_4V6I_075No text annotation
HL_4V6I_076No text annotation
HL_4V6I_077UNCG
HL_4V6I_078No text annotation
HL_4V6I_079No text annotation
HL_4V6I_080No text annotation
HL_4V6I_081No text annotation
HL_4V6I_082GNRA
HL_4V6I_083GNRA
HL_4V6I_084No text annotation
HL_4V6I_085No text annotation
HL_4V6I_086No text annotation
HL_4V6I_087No text annotation
HL_4V6I_088GNRA with extra cWW
HL_4V6I_089Mini UNCG
HL_4V6I_090No text annotation
HL_4V6I_091No text annotation
HL_4V6I_092No text annotation
HL_4V6I_093Pseudoknot geometry
HL_4V6I_094No text annotation
HL_4V6I_095GNRA
HL_4V6I_096Pseudoknot geometry
HL_4V6I_097No text annotation
HL_4V6I_098No text annotation
HL_4V6I_099No text annotation
HL_4V6I_100GNRA
HL_4V6I_101GNRA
HL_4V6I_102Ribsomal LSU H95
HL_4V6I_103No text annotation
HL_4V6I_104No text annotation
HL_4V6I_105tRNA anticodon loop
HL_4V6I_106No text annotation
HL_4V6I_107No text annotation
HL_4V6I_108Pseudoknot with intercalation
HL_4V6I_109No text annotation
HL_4V6I_110No text annotation
HL_4V6I_121No text annotation
HL_4V6I_111No text annotation
HL_4V6I_112GNRA

Valid loops

No loops found

Problematic loops

#loop idProblemSequence
IL_4V6I_001Isolated non-canonical cWW pair
IL_4V6I_002Triple sheared related
IL_4V6I_003No text annotation
IL_4V6I_208No text annotation
IL_4V6I_004Minor groove platform
IL_4V6I_005Multiple bulged bases
IL_4V6I_006No text annotation
IL_4V6I_007No text annotation
IL_4V6I_008Multiple bulged bases
IL_4V6I_009No text annotation
IL_4V6I_010No text annotation
IL_4V6I_011Tandem non-canonical cWW pairs
IL_4V6I_209No text annotation
IL_4V6I_210No text annotation
IL_4V6I_012Single stack bend
IL_4V6I_211Kink-turn with non-sequential stacking
IL_4V6I_013No text annotation
IL_4V6I_014No text annotation
IL_4V6I_015No text annotation
IL_4V6I_255No text annotation
IL_4V6I_212Tandem non-canonical cWW pairs
IL_4V6I_016Isolated cWH basepair
IL_4V6I_017Isolated near basepair
IL_4V6I_018Single bulged U
IL_4V6I_019C-loop
IL_4V6I_020Single bulged G
IL_4V6I_021Single stack bend
IL_4V6I_022Decoding loop related
IL_4V6I_023Kink-turn related
IL_4V6I_024No text annotation
IL_4V6I_025Isolated non-canonical cWW pair
IL_4V6I_213tSH-tHW-tHS-cWW
IL_4V6I_026tSH-tHW-tHS
IL_4V6I_214No text annotation
IL_4V6I_027Tandem non-canonical cWW pairs
IL_4V6I_028Major groove platform
IL_4V6I_029tSH-tHW
IL_4V6I_030Tandem non-canonical cWW pairs
IL_4V6I_215No text annotation
IL_4V6I_031Tandem non-canonical cWW pairs
IL_4V6I_032No text annotation
IL_4V6I_216No text annotation
IL_4V6I_217No text annotation
IL_4V6I_033Other IL
IL_4V6I_034tSH-tHW-tHS
IL_4V6I_218No text annotation
IL_4V6I_035No text annotation
IL_4V6I_036Single stack bend
IL_4V6I_219Single stack bend
IL_4V6I_037No text annotation
IL_4V6I_220No text annotation
IL_4V6I_038No text annotation
IL_4V6I_256Single bulged A
IL_4V6I_221Tandem non-canonical cWW pairs
IL_4V6I_039No text annotation
IL_4V6I_222Single bulged G
IL_4V6I_040No text annotation
IL_4V6I_041Isolated non-canonical cWW pair
IL_4V6I_223Tandem non-canonical cWW pairs
IL_4V6I_042Minor groove platform
IL_4V6I_043Single bulged U
IL_4V6I_044Isolated non-canonical cWW with bulges
IL_4V6I_224Multiple bulged bases
IL_4V6I_225No text annotation
IL_4V6I_045No text annotation
IL_4V6I_046Single bulged A
IL_4V6I_226Isolated non-canonical cWW pair
IL_4V6I_047Tandem non-canonical cWW pairs
IL_4V6I_227No text annotation
IL_4V6I_048Multiple bulged bases
IL_4V6I_049Single stack bend
IL_4V6I_050No text annotation
IL_4V6I_051No text annotation
IL_4V6I_228No text annotation
IL_4V6I_052No text annotation
IL_4V6I_229No text annotation
IL_4V6I_053No text annotation
IL_4V6I_230No text annotation
IL_4V6I_054No text annotation
IL_4V6I_055Isolated non-canonical cWW pair
IL_4V6I_056No text annotation
IL_4V6I_057No text annotation
IL_4V6I_058Double sheared
IL_4V6I_059Single stack bend
IL_4V6I_060Tandem non-canonical cWW pairs
IL_4V6I_231Isolated non-canonical cWW pair
IL_4V6I_061Double sheared
IL_4V6I_062Isolated non-canonical cWW pair
IL_4V6I_063Tandem non-canonical cWW pairs
IL_4V6I_064Triple sheared
IL_4V6I_065Other IL
IL_4V6I_066Isolated non-canonical cWW pair
IL_4V6I_067Single stack bend
IL_4V6I_068Single stack bend
IL_4V6I_069Single stack bend
IL_4V6I_070Not an internal loop
IL_4V6I_0718x7 Sarcin-Ricin; G-bulge
IL_4V6I_072No text annotation
IL_4V6I_073Isolated non-canonical cWW pair
IL_4V6I_074No text annotation
IL_4V6I_075No text annotation
IL_4V6I_076No text annotation
IL_4V6I_077No text annotation
IL_4V6I_232No text annotation
IL_4V6I_078No text annotation
IL_4V6I_079Single bulged U
IL_4V6I_080Major groove platform with extra cWW
IL_4V6I_081Isolated non-canonical cWW pair
IL_4V6I_233Single bulged A
IL_4V6I_082No text annotation
IL_4V6I_083Triple sheared with non-canonical cWW
IL_4V6I_084Isolated non-canonical cWW pair
IL_4V6I_234No text annotation
IL_4V6I_085No text annotation
IL_4V6I_086Single stack bend
IL_4V6I_087No text annotation
IL_4V6I_235No text annotation
IL_4V6I_088No text annotation
IL_4V6I_089No text annotation
IL_4V6I_090No text annotation
IL_4V6I_091No text annotation
IL_4V6I_092Isolated non-canonical cWW pair
IL_4V6I_093No text annotation
IL_4V6I_094Single stack bend
IL_4V6I_236No text annotation
IL_4V6I_095Isolated non-canonical cWW pair
IL_4V6I_237Single stack bend
IL_4V6I_096No text annotation
IL_4V6I_238Double sheared with non-canonical cWW
IL_4V6I_097No text annotation
IL_4V6I_098Isolated non-canonical cWW pair
IL_4V6I_099tHW-tHW cross-strand stack
IL_4V6I_100Single bulged G
IL_4V6I_101Triple sheared with non-canonical cWW
IL_4V6I_102No text annotation
IL_4V6I_103Single bulged U
IL_4V6I_104No text annotation
IL_4V6I_105Isolated non-canonical cWW pair
IL_4V6I_106No text annotation
IL_4V6I_107No text annotation
IL_4V6I_108No text annotation
IL_4V6I_109Stack and bulge
IL_4V6I_110No text annotation
IL_4V6I_111Single stack bend
IL_4V6I_112No text annotation
IL_4V6I_113Double sheared
IL_4V6I_114No text annotation
IL_4V6I_115No text annotation
IL_4V6I_116No text annotation
IL_4V6I_117Isolated non-canonical cWW pair
IL_4V6I_118UAA/GAN
IL_4V6I_119SSU/LSU pseudoknot
IL_4V6I_120Single bulged U
IL_4V6I_121No text annotation
IL_4V6I_239No text annotation
IL_4V6I_122Isolated non-canonical cWW pair
IL_4V6I_123Kink-turn
IL_4V6I_124No text annotation
IL_4V6I_125Major groove platform with extra cWW
IL_4V6I_126No text annotation
IL_4V6I_127Kink-turn
IL_4V6I_128Isolated non-canonical cWW pair
IL_4V6I_129Isolated non-canonical cWW pair
IL_4V6I_130Isolated cWH basepair
IL_4V6I_2407x6 Sarcin-Ricin; G-bulge
IL_4V6I_1318x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
IL_4V6I_132Major groove platform; stack outside cWW
IL_4V6I_133C-loop
IL_4V6I_134UAA/GAN
IL_4V6I_135No text annotation
IL_4V6I_136Triple sheared
IL_4V6I_137Isolated non-canonical cWW pair
IL_4V6I_138No text annotation
IL_4V6I_241No text annotation
IL_4V6I_257No text annotation
IL_4V6I_139No text annotation
IL_4V6I_242No text annotation
IL_4V6I_140No text annotation
IL_4V6I_141Tandem non-canonical cWW pairs
IL_4V6I_243No text annotation
IL_4V6I_142No text annotation
IL_4V6I_143No text annotation
IL_4V6I_144No text annotation
IL_4V6I_145Major groove platform; stack outside cWW
IL_4V6I_244No text annotation
IL_4V6I_146No text annotation
IL_4V6I_147tSH-tSH-tHH-tHS
IL_4V6I_148Isolated non-canonical cWW pair
IL_4V6I_149No text annotation
IL_4V6I_245No text annotation
IL_4V6I_150No text annotation
IL_4V6I_151No text annotation
IL_4V6I_152Single stack bend
IL_4V6I_153Tandem non-canonical cWW pairs
IL_4V6I_154Isolated non-canonical cWW pair
IL_4V6I_246Tandem non-canonical cWW pairs
IL_4V6I_247Single bulged A
IL_4V6I_155Other IL
IL_4V6I_156Kink-turn related
IL_4V6I_157Major groove intercalation
IL_4V6I_158Major groove intercalation
IL_4V6I_159Single stack bend
IL_4V6I_248Minor groove platform, major groove intercalation
IL_4V6I_160No text annotation
IL_4V6I_161No text annotation
IL_4V6I_162Bulged stacked bases
IL_4V6I_163No text annotation
IL_4V6I_164No text annotation
IL_4V6I_165Major groove platform with intercalation
IL_4V6I_166Single bulged U
IL_4V6I_167Minor groove platform
IL_4V6I_168Isolated tHS basepair with bulges
IL_4V6I_169No text annotation
IL_4V6I_170No text annotation
IL_4V6I_171No text annotation
IL_4V6I_249No text annotation
IL_4V6I_172Isolated tHS basepair with bulges
IL_4V6I_173No text annotation
IL_4V6I_174Single stack bend
IL_4V6I_175Major groove platform
IL_4V6I_176Isolated non-canonical cWW pair
IL_4V6I_177Major groove platform
IL_4V6I_250Major groove minor groove platform with extra cWW
IL_4V6I_178No text annotation
IL_4V6I_179Triple sheared
IL_4V6I_180Major groove platform
IL_4V6I_181Isolated non-canonical cWW with bulges
IL_4V6I_182No text annotation
IL_4V6I_183Not an internal loop
IL_4V6I_184Major groove platform with intercalation
IL_4V6I_185Isolated non-canonical cWW pair
IL_4V6I_186Single bulged A
IL_4V6I_187No text annotation
IL_4V6I_188Isolated non-canonical cWW pair
IL_4V6I_189Sarcin-Ricin target in LSU H95; G-bulge
IL_4V6I_190Major groove minor groove platform with tHH
IL_4V6I_251No text annotation
IL_4V6I_191No text annotation
IL_4V6I_192No text annotation
IL_4V6I_193UAA/GAN
IL_4V6I_194Isolated non-canonical cWW pair
IL_4V6I_195No text annotation
IL_4V6I_196No text annotation
IL_4V6I_197No text annotation
IL_4V6I_198Tandem non-canonical cWW pairs
IL_4V6I_199Single stack bend
IL_4V6I_200No text annotation
IL_4V6I_201tHS double platform
IL_4V6I_202No text annotation
IL_4V6I_203No text annotation
IL_4V6I_252No text annotation
IL_4V6I_253Double sheared
IL_4V6I_204No text annotation
IL_4V6I_254No text annotation
IL_4V6I_205No text annotation
IL_4V6I_206Symmetric double minor groove platform
IL_4V6I_207No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V6I_0341/DA/501:503,
1/DA/588:593,
1/DA/609:612
No text annotation
J3_4V6I_0391/DA/3168:3211,
1/DA/3224:3229,
1/DA/3258:3282
No text annotation

Problematic loops

#loop idProblemSequence
J3_4V6I_001No text annotation
J3_4V6I_002No text annotation
J3_4V6I_003No text annotation
J3_4V6I_040No text annotation
J3_4V6I_029No text annotation
J3_4V6I_004No text annotation
J3_4V6I_005No text annotation
J3_4V6I_006No text annotation
J3_4V6I_041No text annotation
J3_4V6I_007No text annotation
J3_4V6I_030No text annotation
J3_4V6I_008No text annotation
J3_4V6I_009No text annotation
J3_4V6I_010No text annotation
J3_4V6I_011No text annotation
J3_4V6I_031No text annotation
J3_4V6I_012No text annotation
J3_4V6I_032No text annotation
J3_4V6I_033No text annotation
J3_4V6I_013No text annotation
J3_4V6I_014No text annotation
J3_4V6I_035No text annotation
J3_4V6I_015No text annotation
J3_4V6I_016No text annotation
J3_4V6I_017No text annotation
J3_4V6I_018No text annotation
J3_4V6I_019No text annotation
J3_4V6I_020No text annotation
J3_4V6I_021No text annotation
J3_4V6I_036No text annotation
J3_4V6I_037No text annotation
J3_4V6I_038No text annotation
J3_4V6I_022No text annotation
J3_4V6I_023No text annotation
J3_4V6I_024No text annotation
J3_4V6I_025No text annotation
J3_4V6I_026No text annotation
J3_4V6I_027No text annotation
J3_4V6I_028No text annotation
J4_4V6I_001No text annotation
J4_4V6I_002No text annotation
J4_4V6I_003No text annotation
J4_4V6I_004No text annotation
J4_4V6I_005No text annotation
J4_4V6I_006No text annotation
J4_4V6I_007No text annotation
J4_4V6I_008No text annotation
J4_4V6I_009No text annotation
J4_4V6I_010No text annotation
J4_4V6I_011No text annotation
J4_4V6I_012No text annotation
J4_4V6I_013No text annotation
J5_4V6I_007No text annotation
J5_4V6I_001No text annotation
J5_4V6I_002No text annotation
J5_4V6I_003No text annotation
J5_4V6I_004No text annotation
J5_4V6I_005No text annotation
J5_4V6I_006No text annotation
J6_4V6I_001No text annotation
J7_4V6I_002No text annotation
J7_4V6I_001No text annotation

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