HL_4V6I_013

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UUUUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_013 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3291

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

4V6I|1|CA|U|663
4V6I|1|CA|U|664
4V6I|1|CA|U|665
4V6I|1|CA|U|666
4V6I|1|CA|U|667
4V6I|1|CA|C|668
4V6I|1|CA|G|669

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AC

40S ribosomal protein rpS9 (S4p)