HL_4V6I_015

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GAGGUGAAAUUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|CA|G|899
4V6I|1|CA|A|900
4V6I|1|CA|G|901
4V6I|1|CA|G|902
4V6I|1|CA|U|903
4V6I|1|CA|G|904
4V6I|1|CA|A|905
4V6I|1|CA|A|906
4V6I|1|CA|A|907
4V6I|1|CA|U|908
4V6I|1|CA|U|909
4V6I|1|CA|C|910

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AF

40S ribosomal protein rpS5 (S7p)

Chain AK

40S ribosomal protein rpS14 (S11p)

Chain CC

MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')

Chain DA

Large subunit ribosomal RNA; LSU rRNA