HL_4V6I_035

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UAAGCAUA

Length

8 nucleotides

Bulged bases

4V6I|1|DA|A|40

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_035 not in the Motif Atlas

Homologous match to HL_8C3A_001

Geometric discrepancy: 0.1636

The information below is about HL_8C3A_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V6I|1|DA|U|38
4V6I|1|DA|A|39
4V6I|1|DA|A|40
4V6I|1|DA|G|41
4V6I|1|DA|C|42
4V6I|1|DA|A|43
4V6I|1|DA|U|44
4V6I|1|DA|A|45

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BO

60S ribosomal protein rpL28 (L15p)

Chain BP

60S ribosomal protein rpL15 (L15e)

Chain Br

60S ribosomal protein rpL42 (L44e)