HL_4V6I_042
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 4V6I|1|DA|G|304
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6I_042 not in the Motif Atlas
- Homologous match to HL_5TBW_009
- Geometric discrepancy: 0.4477
- The information below is about HL_5TBW_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
4V6I|1|DA|G|303
4V6I|1|DA|G|304
4V6I|1|DA|U|305
4V6I|1|DA|A|306
4V6I|1|DA|A|307
4V6I|1|DA|A|308
4V6I|1|DA|U|309
4V6I|1|DA|U|310
4V6I|1|DA|C|311
4V6I|1|DA|C|312
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BA
- 60S ribosomal protein rpL1 (L1p)
- Chain BO
- 60S ribosomal protein rpL28 (L15p)
- Chain BP
- 60S ribosomal protein rpL15 (L15e)
- Chain Bk
- 60S ribosomal protein rpL36 (L36e)
- Chain Br
- 60S ribosomal protein rpL42 (L44e)
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