HL_4V6I_049

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UGUAAAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_049 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3497

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4V6I|1|DA|U|687
4V6I|1|DA|G|688
4V6I|1|DA|U|689
4V6I|1|DA|A|690
4V6I|1|DA|A|691
4V6I|1|DA|A|692
4V6I|1|DA|A|693

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BD

60S ribosomal protein rpL4 (L4p)

Chain BL

60S ribosomal protein rpL13 (L13e)

Chain BY

60S ribosomal protein rpL26 (L24p)