HL_4V6I_050

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_050 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.4133

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V6I|1|DA|U|707
4V6I|1|DA|G|708
4V6I|1|DA|A|709
4V6I|1|DA|A|710
4V6I|1|DA|A|711
4V6I|1|DA|G|712

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BL

60S ribosomal protein rpL13 (L13e)

Chain BO

60S ribosomal protein rpL28 (L15p)