HL_4V6I_051

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

4V6I|1|DA|A|735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_051 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3889

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V6I|1|DA|C|732
4V6I|1|DA|G|733
4V6I|1|DA|C|734
4V6I|1|DA|A|735
4V6I|1|DA|A|736
4V6I|1|DA|G|737

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BR

60S ribosomal protein rpL18 (L18e)

Chain BU

60S ribosomal protein rpL21 (L21e)