HL_4V6I_053

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_053 not in the Motif Atlas

Homologous match to HL_5TBW_019

Geometric discrepancy: 0.1668

The information below is about HL_5TBW_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V6I|1|DA|G|844
4V6I|1|DA|G|845
4V6I|1|DA|A|846
4V6I|1|DA|A|847
4V6I|1|DA|A|848
4V6I|1|DA|C|849

Current chains

Chain DA

25S rRNA

Nearby chains

Chain AO

40S ribosomal protein rpS13 (S15p)

Chain Bm

60S ribosomal protein rpL43 (L37ae)

Chain CA

Small subunit ribosomal RNA; SSU rRNA