HL_4V6I_065

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_065 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1687

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4V6I|1|DA|A|1462
4V6I|1|DA|U|1463
4V6I|1|DA|G|1464
4V6I|1|DA|A|1465
4V6I|1|DA|G|1466
4V6I|1|DA|A|1467
4V6I|1|DA|A|1468
4V6I|1|DA|C|1469
4V6I|1|DA|U|1470

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BT

60S ribosomal protein rpL19 (L19e)

Chain BV

60S ribosomal protein rpL17 (L22p)

Chain Bg

60S ribosomal protein rpL31 (L31e)