HL_4V6I_066

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

4V6I|1|DA|G|1507, 4V6I|1|DA|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_066 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.3597

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4V6I|1|DA|A|1506
4V6I|1|DA|G|1507
4V6I|1|DA|C|1508
4V6I|1|DA|A|1509
4V6I|1|DA|G|1510
4V6I|1|DA|U|1511
4V6I|1|DA|U|1512

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BT

60S ribosomal protein rpL19 (L19e)

Chain BV

60S ribosomal protein rpL17 (L22p)

Chain Bo

60S ribosomal protein rpL39 (L39e)