HL_4V6I_069
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- GUUAAGAUUC
- Length
- 10 nucleotides
- Bulged bases
- 4V6I|1|DA|U|1606, 4V6I|1|DA|U|1607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6I_069 not in the Motif Atlas
- Homologous match to HL_8C3A_035
- Geometric discrepancy: 0.1676
- The information below is about HL_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V6I|1|DA|G|1599
4V6I|1|DA|U|1600
4V6I|1|DA|U|1601
4V6I|1|DA|A|1602
4V6I|1|DA|A|1603
4V6I|1|DA|G|1604
4V6I|1|DA|A|1605
4V6I|1|DA|U|1606
4V6I|1|DA|U|1607
4V6I|1|DA|C|1608
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BT
- 60S ribosomal protein rpL19 (L19e)
- Chain BX
- 60S ribosomal protein rpL25 (L23p)
- Chain Bo
- 60S ribosomal protein rpL39 (L39e)
- Chain Bp
- 60S ribosomal protein rpL40 (L40e)
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