HL_4V6I_071

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AGUUAUCUUUU

Length

11 nucleotides

Bulged bases

4V6I|1|DA|U|1682

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|A|1679
4V6I|1|DA|G|1680
4V6I|1|DA|U|1681
4V6I|1|DA|U|1682
4V6I|1|DA|A|1683
4V6I|1|DA|U|1684
4V6I|1|DA|C|1685
4V6I|1|DA|U|1686
4V6I|1|DA|U|1687
4V6I|1|DA|U|1688
4V6I|1|DA|U|1689

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BT

60S ribosomal protein rpL19 (L19e)

Chain BW

60S ribosomal protein rpL22 (L22e)