HL_4V6I_083

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_083 not in the Motif Atlas

Homologous match to HL_8C3A_048

Geometric discrepancy: 0.4682

The information below is about HL_8C3A_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V6I|1|DA|A|2220
4V6I|1|DA|G|2221
4V6I|1|DA|A|2222
4V6I|1|DA|A|2223
4V6I|1|DA|A|2224
4V6I|1|DA|U|2225

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BA

60S ribosomal protein rpL1 (L1p)

Chain Bk

60S ribosomal protein rpL36 (L36e)

Chain Br

60S ribosomal protein rpL42 (L44e)