HL_4V6I_086

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

4V6I|1|DA|A|2372, 4V6I|1|DA|A|2373, 4V6I|1|DA|C|2374, 4V6I|1|DA|G|2376

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_086 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.2543

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

4V6I|1|DA|G|2369
4V6I|1|DA|G|2370
4V6I|1|DA|G|2371
4V6I|1|DA|A|2372
4V6I|1|DA|A|2373
4V6I|1|DA|C|2374
4V6I|1|DA|G|2375
4V6I|1|DA|G|2376
4V6I|1|DA|G|2377
4V6I|1|DA|C|2378

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BC

60S ribosomal protein rpL3 (L3p)

Chain Bh

60S ribosomal protein pL32 (L32e)